Mike, those are very good and well thought out questions, definitely not ignorant. Your beds, if they do not have a bottom to them, (like a perforated plastic liner or a thick layer of gravel) don't have to be very deep. We have five raised beds, and none are deeper than 8". The plants' roots will go down as deep as they need and since your are in southern California, your soil should be pretty good.
I can't advise on soil since I'm working with blackland prairie soil and sandy loam (yeah, Texas has it all!). I bet someone else on this forum can help with the soil question.
Mixing well-composted manure (chicken, sheep, cow) in before planting is a great idea. We keep chickens and the neighbors have cattle, but I've seen bags for sale at nurseries and big-box stores. Just make sure it is well composted or you can burn out plants with the high-nitrogen chicken manure, or get some very interesting plants from the sheep and cow manure if it didn't get hot enough to kill any lurking seeds.