Greetings, welcome to the Forums.
This does seemlikely be an nutrient deficiency that has progressed to an exceptional level.
An aquaponic-grown plant is in an environment where all nutrients must be intentionally supplied by the grower.
If some nutrient was overlooked or improperly applied, then an nutrient deficiency would be quite likely.
It would be good if the OP included an explanation of which types of fertilizer and application methods had been applied.
That the new grow looks healthy suggests that corrective dosing of fertilizer may have already been applied, though this is also not stated. A Magnesium deficiency can appear somewhat similar on Tomatoes (Solanum lycopersicum), but so can other deficiencies such as Potassium, Zinc, and Chlorine.